PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 446aa    MW: 48233.6 Da    PI: 4.603
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016661.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1752102254
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                  ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++ 
  Do016661.1  52 LFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIA 102
                 59******************9...6445**********************9876 PP

2AP251.91.8e-16260310153
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                 + y+GVr++ ++grWv+e+r+p   g +  r +lg+f  ae+Aa+a++aa++++
  Do016661.1 260 PVYRGVRRRGNTGRWVCEVRVP---GrRACRLWLGTFNAAEGAARAHDAAMLAI 310
                 68*******************9...7455**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.60E-1151113No hitNo description
PfamPF008475.3E-1351103IPR001471AP2/ERF domain
PROSITE profilePS5103220.94352111IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-1852113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-2752113IPR001471AP2/ERF domain
SMARTSM003802.4E-1952117IPR001471AP2/ERF domain
PfamPF008472.3E-12260312IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16261322IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-26261322IPR001471AP2/ERF domain
SMARTSM003801.9E-17261326IPR001471AP2/ERF domain
PROSITE profilePS5103220.389261320IPR001471AP2/ERF domain
CDDcd000182.50E-20262322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MCQIKKEMIA ESGSPCSSPS ASTSSEHHQT VWTSPPKRPA GRTKFRETRH PLFRGVRRRG  60
NAGRWVCEVR VPGRRGCRLW LGTFDTAEAA ARAHDAAMLA IAGAGACLNF ADSAWLLAVP  120
ASYASLADVR LAVAEAVEDF QRREALSLSE DDARSATSSP ANDDDAEESS SVAEDSPFEM  180
DVFCDMSWDL YYASLAQAML MEPPSTVTAF CDDGVAEKEM IGESASPCCS ASTSSEHQTV  240
WTSPPKRPAG RTKFRETRHP VYRGVRRRGN TGRWVCEVRV PGRRACRLWL GTFNAAEGAA  300
RAHDAAMLAI AGSGACLNFA DSAWLLALPA SYASLAEVRH AVAEAVEDFL RREAVPEDDA  360
LSATSSTPSS PASDDGSATE GEESYDSYPA TGNSPFELDV FNDMSWDLYY MSLAQGMLME  420
PPSVVTAFCD DGVADVPLWS YLESKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858991e-159AY785899.1 Sorghum bicolor cultivar BTX 623 SbCBF6 (CBF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957404.11e-112PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotA2Z3899e-92DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
SwissprotQ64MA18e-92DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0E0IFD41e-111A0A0E0IFD4_ORYNI; Uncharacterized protein
TrEMBLK3ZWL91e-112K3ZWL9_SETIT; Uncharacterized protein
STRINGSi031001m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-28C-repeat/DRE binding factor 2